Package: JMH 1.0.4

JMH: Joint Model of Heterogeneous Repeated Measures and Survival Data

Maximum likelihood estimation for the semi-parametric joint modeling of competing risks and longitudinal data in the presence of heterogeneous within-subject variability, proposed by Li and colleagues (2023) <doi:10.48550/arXiv.2506.12741>. The proposed method models the within-subject variability of the biomarker and associates it with the risk of the competing risks event. The time-to-event data is modeled using a (cause-specific) Cox proportional hazards regression model with time-fixed covariates. The longitudinal outcome is modeled using a mixed-effects location and scale model. The association is captured by shared random effects. The model is estimated using an Expectation Maximization algorithm. This is the final release of the 'JMH' package. Active development has been moved to the 'FastJM' package, which provides improved functionality and ongoing support. Users are strongly encouraged to transition to 'FastJM'.

Authors:Shanpeng Li [aut, cre], Gang Li [ctb]

JMH_1.0.4.tar.gz
JMH_1.0.4.zip(r-4.7)JMH_1.0.4.zip(r-4.6)JMH_1.0.4.zip(r-4.5)
JMH_1.0.4.tgz(r-4.6-x86_64)JMH_1.0.4.tgz(r-4.6-arm64)JMH_1.0.4.tgz(r-4.5-x86_64)JMH_1.0.4.tgz(r-4.5-arm64)
JMH_1.0.4.tar.gz(r-4.7-arm64)JMH_1.0.4.tar.gz(r-4.7-x86_64)JMH_1.0.4.tar.gz(r-4.6-arm64)JMH_1.0.4.tar.gz(r-4.6-x86_64)
JMH_1.0.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
JMH/json (API)

# Install 'JMH' in R:
install.packages('JMH', repos = c('https://shanpengli.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/shanpengli/jmh/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • cdata - Simulated competing risks data
  • ydata - Simulated longitudinal data

On CRAN:

Conda:

cpp

3.18 score 3 stars 2 scripts 341 downloads 6 exports 127 dependencies

Last updated from:7a69edb461. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK331
linux-devel-x86_64OK372
source / vignettesOK367
linux-release-arm64OK324
linux-release-x86_64OK386
macos-release-arm64OK275
macos-release-x86_64OK519
macos-oldrel-arm64OK290
macos-oldrel-x86_64OK596
windows-develOK423
windows-releaseOK416
windows-oldrelOK426
wasm-releaseOK307

Exports:AUCJMMLSMConcordanceJMMLSMJMMLSMMAEQJMMLSMPEJMMLSMsurvfitJMMLSM

Dependencies:backportsbase64encbslibcachemcaretcheckmateclasscliclockclustercmprskcodetoolscolorspacecpp11data.tablediagramdigestdoParalleldplyre1071evaluatefarverfastmapfontawesomeforeachforeignFormulafsfuturefuture.applygenericsggplot2glmnetglobalsgluegowergridExtragtablehardhathighrHmischtmlTablehtmltoolshtmlwidgetsipredisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelavalifecyclelistenvlubridatemagrittrMASSMatrixMatrixModelsmemoisemetsmimeModelMetricsmultcompmvtnormnlmennetnumDerivparallellypecpillarpkgconfigplotrixplyrpolsplinepROCprodlimprogressrproxyPublishpurrrquantregR6rangerrappdirsRColorBrewerRcppRcppArmadilloRcppEigenrecipesreshape2riskRegressionrlangrmarkdownrmsrpartrstudioapiS7sandwichsassscalesshapeSparseMsparsevctrsSQUAREMstatmodstringistringrsurvivalTH.datatibbletidyrtidyselecttimechangetimeDatetimeregtinytextzdbutf8vctrsviridisLitewithrxfunyamlzoo