Package: JMH 1.0.4
JMH: Joint Model of Heterogeneous Repeated Measures and Survival Data
Maximum likelihood estimation for the semi-parametric joint modeling of competing risks and longitudinal data in the presence of heterogeneous within-subject variability, proposed by Li and colleagues (2023) <doi:10.48550/arXiv.2506.12741>. The proposed method models the within-subject variability of the biomarker and associates it with the risk of the competing risks event. The time-to-event data is modeled using a (cause-specific) Cox proportional hazards regression model with time-fixed covariates. The longitudinal outcome is modeled using a mixed-effects location and scale model. The association is captured by shared random effects. The model is estimated using an Expectation Maximization algorithm. This is the final release of the 'JMH' package. Active development has been moved to the 'FastJM' package, which provides improved functionality and ongoing support. Users are strongly encouraged to transition to 'FastJM'.
Authors:
JMH_1.0.4.tar.gz
JMH_1.0.4.zip(r-4.7)JMH_1.0.4.zip(r-4.6)JMH_1.0.4.zip(r-4.5)
JMH_1.0.4.tgz(r-4.6-x86_64)JMH_1.0.4.tgz(r-4.6-arm64)JMH_1.0.4.tgz(r-4.5-x86_64)JMH_1.0.4.tgz(r-4.5-arm64)
JMH_1.0.4.tar.gz(r-4.7-arm64)JMH_1.0.4.tar.gz(r-4.7-x86_64)JMH_1.0.4.tar.gz(r-4.6-arm64)JMH_1.0.4.tar.gz(r-4.6-x86_64)
JMH_1.0.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
JMH/json (API)
| # Install 'JMH' in R: |
| install.packages('JMH', repos = c('https://shanpengli.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/shanpengli/jmh/issues
Last updated from:7a69edb461. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 331 | ||
| linux-devel-x86_64 | OK | 362 | ||
| source / vignettes | OK | 400 | ||
| linux-release-arm64 | OK | 349 | ||
| linux-release-x86_64 | OK | 371 | ||
| macos-release-arm64 | OK | 230 | ||
| macos-release-x86_64 | OK | 507 | ||
| macos-oldrel-arm64 | OK | 221 | ||
| macos-oldrel-x86_64 | OK | 606 | ||
| windows-devel | OK | 414 | ||
| windows-release | OK | 389 | ||
| windows-oldrel | OK | 403 | ||
| wasm-release | OK | 257 |
Exports:AUCJMMLSMConcordanceJMMLSMJMMLSMMAEQJMMLSMPEJMMLSMsurvfitJMMLSM
Dependencies:backportsbase64encbslibcachemcaretcheckmateclasscliclockclustercmprskcodetoolscolorspacecpp11data.tablediagramdigestdoParalleldplyre1071evaluatefarverfastmapfontawesomeforeachforeignFormulafsfuturefuture.applygenericsggplot2glmnetglobalsgluegowergridExtragtablehardhathighrHmischtmlTablehtmltoolshtmlwidgetsipredisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelavalifecyclelistenvlubridatemagrittrMASSMatrixMatrixModelsmemoisemetsmimeModelMetricsmultcompmvtnormnlmennetnumDerivparallellypecpillarpkgconfigplotrixplyrpolsplinepROCprodlimprogressrproxyPublishpurrrquantregR6rangerrappdirsRColorBrewerRcppRcppArmadilloRcppEigenrecipesreshape2riskRegressionrlangrmarkdownrmsrpartrstudioapiS7sandwichsassscalesshapeSparseMsparsevctrsSQUAREMstatmodstringistringrsurvivalTH.datatibbletidyrtidyselecttimechangetimeDatetimeregtinytextzdbutf8vctrsviridisLitewithrxfunyamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Time-dependent AUC for joint models | AUCJMMLSM |
| Simulated competing risks data | cdata |
| Concordance for joint models | ConcordanceJMMLSM |
| Joint Modeling for Continuous outcomes | JMMLSM |
| A metric of prediction accuracy of joint model by comparing the predicted risk with the empirical risks stratified on different predicted risk group. | MAEQJMMLSM |
| A metric of prediction accuracy of joint model by comparing the predicted risk with the counting process. | PEJMMLSM |
| Plot conditional probabilities for new subjects | plot.survfitJMMLSM |
| Print JMMLSM | print.JMMLSM |
| Print survfitJMMLSM | print.survfitJMMLSM |
| Summaries of evaluation metrics for joint models | summary summary.AUCJMMLSM summary.ConcordanceJMMLSM summary.JMMLSM summary.MAEQJMMLSM summary.PEJMMLSM |
| Prediction in Joint Models | survfitJMMLSM |
| Variance-covariance matrix of the estimated parameters for joint models | vcov vcov.JMMLSM |
| Simulated longitudinal data | ydata |
